BLAST-XYPIot Viewer: A Tool for Performing BLAST in Whole-Genome Sequenced Bacteria/Archaea and Visualize Whole Results Simultaneously
Por:
Pedraza-Perez, Yagul, Alberto Cuevas-Vede, Rodrigo, Bernardo Canto-Gomez, Angel, Lopez-Pliego, Liliana, Maria Gutierrez-Rios, Rosa, Hernandez-Lucas, Ismael, Rubin-Linares, Gustavo, Martinez-Laguna, Ygnacio, Francisco Lopez-Olguin, Jesus, Ernesto Fuentes-Ramirez, Luis
Publicada:
1 jul 2018
Resumen:
One of the most commonly used tools to compare protein or DNA sequences
against databases is BLAST. We introduce a web tool that allows the
performance of BLAST-searches of protein/ DNA sequences in whole-genome
sequenced bacteria/archaea, and displays a large amount of BLAST-results
simultaneously. The circular bacterial replicons are projected as
horizontal lines with fixed length of 360, representing the degrees of a
circle. A coordinate system is created with length of the replicon along
the x-axis and the number of replicon used on the y-axis. When a query
sequence matches with a gene/ protein of a particular replicon, the
BLAST-results are depicted as an ``x,y'' position in a specially
adapted plot. This tool allows the visualization of the results from the
whole data to a particular gene/protein in real time with low
computational resources.
Filiaciones:
Pedraza-Perez, Yagul:
Benemerita Univ Autonoma Puebla, Inst Ciencias, Puebla 72570, Pue, Mexico
Alberto Cuevas-Vede, Rodrigo:
Benemerita Univ Autonoma Puebla, Fac Ciencias Comp, Puebla 72570, Pue, Mexico
Bernardo Canto-Gomez, Angel:
Benemerita Univ Autonoma Puebla, Inst Ciencias, Puebla 72570, Pue, Mexico
Lopez-Pliego, Liliana:
Benemerita Univ Autonoma Puebla, Inst Ciencias, Puebla 72570, Pue, Mexico
Maria Gutierrez-Rios, Rosa:
Univ Nacl Autonoma Mexico, Inst Biotecnol, Cuernavaca 62210, Morelos, Mexico
Hernandez-Lucas, Ismael:
Univ Nacl Autonoma Mexico, Inst Biotecnol, Cuernavaca 62210, Morelos, Mexico
Rubin-Linares, Gustavo:
Benemerita Univ Autonoma Puebla, Fac Ciencias Comp, Puebla 72570, Pue, Mexico
Martinez-Laguna, Ygnacio:
Benemerita Univ Autonoma Puebla, Inst Ciencias, Puebla 72570, Pue, Mexico
Francisco Lopez-Olguin, Jesus:
Benemerita Univ Autonoma Puebla, Inst Ciencias, Puebla 72570, Pue, Mexico
Ernesto Fuentes-Ramirez, Luis:
Benemerita Univ Autonoma Puebla, Inst Ciencias, Puebla 72570, Pue, Mexico
|